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Probleme when install Jira 5.0 on Tomcat 6.0.35 [Failed to find UserTransaction in JDNI]

Manuel Campoman
Manuel Campomanes
Contributor
May 15, 2012

Hello,

I try to install Jira war with this configuration :

  • Linux Server
  • Jira 5.0
  • Tomcat 6.0.35

The Jira application looks to work well but I had this recurrent error in my log file.

But I had this following error :

2012-05-16 11:42:51,275 http-8080-12 WARN      [core.entity.transaction.JNDIFactory] [JNDIFactory.getUserTransaction] Failed to find UserTransaction named java:comp/env/UserTransaction in JNDI.
2012-05-16 11:42:51,277 http-8080-12 WARN      [core.entity.transaction.JNDIFactory] NamingException while finding UserTransaction named java:comp/env/UserTransaction in JNDI.
javax.naming.NameNotFoundException: Le Nom UserTransaction n'est pas lié à ce Contexte
	at org.apache.naming.NamingContext.lookup(NamingContext.java:770)
	at org.apache.naming.NamingContext.lookup(NamingContext.java:140)
	at org.apache.naming.NamingContext.lookup(NamingContext.java:781)
	at org.apache.naming.NamingContext.lookup(NamingContext.java:140)
	at org.apache.naming.NamingContext.lookup(NamingContext.java:781)
	at org.apache.naming.NamingContext.lookup(NamingContext.java:153)
	at org.apache.naming.SelectorContext.lookup(SelectorContext.java:152)
	at javax.naming.InitialContext.lookup(InitialContext.java:392)
	at org.ofbiz.core.entity.transaction.JNDIFactory.getUserTransaction(JNDIFactory.java:113)
	at org.ofbiz.core.entity.TransactionFactory.getUserTransaction(TransactionFactory.java:93)
	at org.ofbiz.core.entity.TransactionUtil.getStatus(TransactionUtil.java:81)
	at org.ofbiz.core.entity.jdbc.SQLProcessor.getConnection(SQLProcessor.java:412)
	at org.ofbiz.core.entity.jdbc.SQLProcessor.prepareStatement(SQLProcessor.java:515)
	at org.ofbiz.core.entity.GenericDAO.selectListIteratorByCondition(GenericDAO.java:1034)
	at org.ofbiz.core.entity.GenericDAO.selectByAnd(GenericDAO.java:605)
	at org.ofbiz.core.entity.GenericHelperDAO.findByAnd(GenericHelperDAO.java:131)
	at org.ofbiz.core.entity.GenericDelegator.findByAnd(GenericDelegator.java:788)
	at org.ofbiz.core.entity.GenericDelegator.findByAnd(GenericDelegator.java:773)
	at org.ofbiz.core.entity.GenericDelegator.findByAnd(GenericDelegator.java:750)
	at com.opensymphony.module.propertyset.ofbiz.OFBizPropertySet.findPropertyEntry(OFBizPropertySet.java:298)
	at com.opensymphony.module.propertyset.ofbiz.OFBizPropertySet.exists(OFBizPropertySet.java:170)
	at com.atlassian.jira.service.OfBizServiceConfigStore.createPropertySet(OfBizServiceConfigStore.java:296)
	at com.atlassian.jira.service.OfBizServiceConfigStore.addServiceConfig(OfBizServiceConfigStore.java:64)
	at com.atlassian.jira.service.DefaultServiceManager.addService(DefaultServiceManager.java:211)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at com.atlassian.multitenant.impl.MultiTenantComponentFactoryImpl$AbstractMultiTenantAwareInvocationHandler.invokeInternal(MultiTenantComponentFactoryImpl.java:181)
	at com.atlassian.multitenant.impl.MultiTenantComponentFactoryImpl$MultiTenantAwareInvocationHandler.invoke(MultiTenantComponentFactoryImpl.java:211)
	at $Proxy1902.addService(Unknown Source)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at com.atlassian.plugin.osgi.hostcomponents.impl.DefaultComponentRegistrar$ContextClassLoaderSettingInvocationHandler.invoke(DefaultComponentRegistrar.java:129)
	at $Proxy1902.addService(Unknown Source)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at com.atlassian.plugin.osgi.bridge.external.HostComponentFactoryBean$DynamicServiceInvocationHandler.invoke(HostComponentFactoryBean.java:154)
	at $Proxy1902.addService(Unknown Source)
	at com.atlassian.sal.jira.scheduling.JiraPluginScheduler.scheduleJob(JiraPluginScheduler.java:98)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
	at org.springframework.osgi.service.importer.support.internal.aop.ServiceInvoker.doInvoke(ServiceInvoker.java:58)
	at org.springframework.osgi.service.importer.support.internal.aop.ServiceInvoker.invoke(ServiceInvoker.java:62)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
	at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:131)
	at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:119)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
	at org.springframework.osgi.service.util.internal.aop.ServiceTCCLInterceptor.invokeUnprivileged(ServiceTCCLInterceptor.java:56)
	at org.springframework.osgi.service.util.internal.aop.ServiceTCCLInterceptor.invoke(ServiceTCCLInterceptor.java:39)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
	at org.springframework.osgi.service.importer.support.LocalBundleContextAdvice.invoke(LocalBundleContextAdvice.java:59)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
	at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:131)
	at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:119)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204)
	at $Proxy2404.scheduleJob(Unknown Source)
	at com.atlassian.jira.plugin.ext.bamboo.service.PlanStatusUpdateServiceImpl.onStart(PlanStatusUpdateServiceImpl.java:113)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
	at org.springframework.osgi.service.importer.support.internal.aop.ServiceInvoker.doInvoke(ServiceInvoker.java:58)
	at org.springframework.osgi.service.importer.support.internal.aop.ServiceInvoker.invoke(ServiceInvoker.java:62)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
	at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:131)
	at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:119)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
	at org.springframework.osgi.service.util.internal.aop.ServiceTCCLInterceptor.invokeUnprivileged(ServiceTCCLInterceptor.java:56)
	at org.springframework.osgi.service.util.internal.aop.ServiceTCCLInterceptor.invoke(ServiceTCCLInterceptor.java:39)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
	at org.springframework.osgi.service.importer.support.LocalBundleContextAdvice.invoke(LocalBundleContextAdvice.java:59)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
	at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:131)
	at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:119)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204)
	at $Proxy1936.onStart(Unknown Source)
	at com.atlassian.sal.core.lifecycle.DefaultLifecycleManager.notifyLifecycleAwareOfStart(DefaultLifecycleManager.java:99)
	at com.atlassian.sal.core.lifecycle.DefaultLifecycleManager.notifyOnStart(DefaultLifecycleManager.java:91)
	at com.atlassian.sal.jira.lifecycle.JiraLifecycleManager.notifyOnStart(JiraLifecycleManager.java:67)
	at com.atlassian.sal.core.lifecycle.DefaultLifecycleManager.start(DefaultLifecycleManager.java:50)
	at com.atlassian.sal.jira.lifecycle.JiraLifecycleManager.onJiraStart(JiraLifecycleManager.java:61)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at com.atlassian.event.internal.SingleParameterMethodListenerInvoker.invoke(SingleParameterMethodListenerInvoker.java:36)
	at com.atlassian.event.internal.AsynchronousAbleEventDispatcher$2.run(AsynchronousAbleEventDispatcher.java:60)
	at com.atlassian.event.internal.AsynchronousAbleEventDispatcher$1.execute(AsynchronousAbleEventDispatcher.java:28)
	at com.atlassian.event.internal.AsynchronousAbleEventDispatcher.dispatch(AsynchronousAbleEventDispatcher.java:56)
	at com.atlassian.event.internal.EventPublisherImpl.invokeListeners(EventPublisherImpl.java:151)
	at com.atlassian.event.internal.EventPublisherImpl.publish(EventPublisherImpl.java:70)
	at com.atlassian.multitenant.event.DefaultPeeringEventPublisherManager.publish(DefaultPeeringEventPublisherManager.java:17)
	at com.atlassian.multitenant.event.PeeringEventPublisher.publish(PeeringEventPublisher.java:23)
	at com.atlassian.plugin.event.impl.DefaultPluginEventManager.broadcast(DefaultPluginEventManager.java:84)
	at com.atlassian.jira.upgrade.PluginUpgradeLauncher.start(PluginUpgradeLauncher.java:38)
	at com.atlassian.jira.startup.DefaultJiraLauncher$3.run(DefaultJiraLauncher.java:104)
	at com.atlassian.jira.config.database.DatabaseConfigurationManagerImpl.doNowOrEnqueue(DatabaseConfigurationManagerImpl.java:250)
	at com.atlassian.jira.config.database.DatabaseConfigurationManagerImpl.doNowOrWhenDatabaseActivated(DatabaseConfigurationManagerImpl.java:149)
	at com.atlassian.jira.startup.DefaultJiraLauncher.postDbLaunch(DefaultJiraLauncher.java:94)
	at com.atlassian.jira.startup.DefaultJiraLauncher.access$100(DefaultJiraLauncher.java:24)
	at com.atlassian.jira.startup.DefaultJiraLauncher$1.run(DefaultJiraLauncher.java:61)
	at com.atlassian.jira.util.devspeed.JiraDevSpeedTimer.run(JiraDevSpeedTimer.java:33)
	at com.atlassian.jira.startup.DefaultJiraLauncher.start(DefaultJiraLauncher.java:56)
	at com.atlassian.jira.startup.LauncherContextListener$1.create(LauncherContextListener.java:67)
	at com.atlassian.jira.startup.LauncherContextListener$1.create(LauncherContextListener.java:62)
	at com.atlassian.multitenant.impl.MultiTenantComponentMapImpl.get(MultiTenantComponentMapImpl.java:121)
	at com.atlassian.multitenant.impl.MultiTenantComponentMapImpl.onTenantStart(MultiTenantComponentMapImpl.java:165)
	at com.atlassian.multitenant.impl.DefaultMultiTenantManager$1.consume(DefaultMultiTenantManager.java:134)
	at com.atlassian.multitenant.impl.DefaultMultiTenantManager$1.consume(DefaultMultiTenantManager.java:131)
	at com.atlassian.multitenant.impl.DefaultMultiTenantManager.runForEachListener(DefaultMultiTenantManager.java:256)
	at com.atlassian.multitenant.impl.DefaultMultiTenantManager.startTenant(DefaultMultiTenantManager.java:130)
	at com.atlassian.multitenant.impl.DefaultMultiTenantManager.startAll(DefaultMultiTenantManager.java:203)
	at com.atlassian.jira.startup.LauncherContextListener.contextInitialized(LauncherContextListener.java:95)
	at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4206)
	at org.apache.catalina.core.StandardContext.start(StandardContext.java:4705)
	at org.apache.catalina.manager.ManagerServlet.start(ManagerServlet.java:1276)
	at org.apache.catalina.manager.HTMLManagerServlet.start(HTMLManagerServlet.java:625)
	at org.apache.catalina.manager.HTMLManagerServlet.doGet(HTMLManagerServlet.java:136)
	at javax.servlet.http.HttpServlet.service(HttpServlet.java:617)
	at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at org.apache.catalina.filters.CsrfPreventionFilter.doFilter(CsrfPreventionFilter.java:186)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233)
	at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191)
	at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:563)
	at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127)
	at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)
	at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)
	at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:293)
	at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:859)
	at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:602)
	at org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:489)
	at java.lang.Thread.run(Thread.java:662)

Thanks you for your help.

Cheers,

Manuel.

Answer
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4 answers

1 vote
parthiban subra1
parthiban subramaniam
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May 22, 2012

The page you were refering to has this information

http://confluence.atlassian.com/display/JIRA/Installing+JIRA+on+Tomcat+6.0

4.2 Other JIRA libraries for Tomcat

here is the direct link

http://www.atlassian.com/software/jira/downloads/binary/jira-jars-tomcat-distribution-5.0-rc2-tomcat-6x.zip

jta-1.0.1B.jar is the version and they all should go under tomcat/lib

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Manuel Campoman
Manuel Campomanes
Contributor
May 22, 2012

Sorry I didn't see this link :/

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Manuel Campoman
Manuel Campomanes
Contributor
May 22, 2012

During my installation, I have a noClassDefFound on this class "javax/transaction/Status", so I install a jta.jar. Which version of this class I need to use ? Is there a jar provided by Jira ?

Cheers,

Manuel.

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Nic Brough -Adaptavist-
Nic Brough -Adaptavist-
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May 15, 2012

Check your jira.xml file for Tomcat - I think you might be missing a resource in there.

Could you tell us which Jira you are working with (standalone or WAR, the version etc) and which instructions you are following to get it set up?

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Manuel Campoman
Manuel Campomanes
Contributor
May 15, 2012

Here is my jira.xml :

<Context path="/jira" docBase="/bu103_jira/users/jiraprj1/atlassian-jira-5.0-war/dist-tomcat/tomcat-6/atlassian-jira-5.0.war" debug="0" useHttpOnly="true">

    <Resource name="UserTransaction" auth="Container" type="javax.transaction.UserTransaction"
    factory="org.objectweb.jotm.UserTransactionFactory" jotm.timeout="60"/>
    <Manager pathname=""/>

</Context>

I follow this : http://confluence.atlassian.com/display/JIRA/Installing+JIRA+on+Tomcat+6.0

Jira version 5.0 with a WAR installation, using Tomcat 6.0.35.

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parthiban subra1
parthiban subramaniam
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May 15, 2012

in your server.xml or context.xml

did you specify

<Resource name="UserTransaction" auth="Container" type="javax.transaction.UserTransaction"
factory="org.objectweb.jotm.UserTransactionFactory" jotm.timeout="60"/>

??

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Manuel Campoman
Manuel Campomanes
Contributor
May 15, 2012

I specify the resource in the jira.xml (atlassian-jira-5.0-war/dist-tomcat/tomcat-6) but not in the server.xml

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parthiban subra1
parthiban subramaniam
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May 15, 2012

All JIRA dependency lib copied under tomcat/lib ?

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