Checkboxes were removed in, I think, version 1.9.
If you are trying to select multiple files, you can control/shift click. Then you can Stage Selected, or right click for other operations on the selected files (Add, Remove, Discard, Ignore, etc).
Here's a bug report asking for the checkboxes to be restored. You can watch it if you like: https://jira.atlassian.com/browse/SRCTREEWIN-5947
For comparison sake, here's an old bug complaining about the behavior when they added the checkbox: https://jira.atlassian.com/browse/SRCTREEWIN-2456
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